Claude CLI Agent Protocol

Overview

Integrate Claude Code CLI via NDJSON in a way that preserves true runtime state in the host UI:

• parse all relevant stdout message types
• send correctly shaped stdin control messages
• handle replay and partial-stream behavior explicitly
• keep interrupt and approval flows consistent

This skill is optimized for host builders who need reliable liveness, queueing, replay dedup, and approval UX.

Required CLI Flags

claude \
  -p \
  --output-format stream-json \
  --input-format stream-json \
  --verbose \
  --permission-prompt-tool stdio

Optional but important:

• --replay-user-messages
  • Re-emits user stdin messages on stdout for acknowledgment.
  • Echoed user messages include isReplay, uuid, and parent_tool_use_id.
• --include-partial-messages
  • Required if your host expects stream_event partial deltas (message_start, content_block_delta, etc.).
  • Without this flag, many runs emit only final assistant + result turn outputs.

Important flag constraints:

• --input-format=stream-json requires --output-format=stream-json.
• --replay-user-messages requires stream-json input and output.
• --include-partial-messages works with --print and stream-json output.
• Do not rely on prompt positional arg when building a long-lived host; send user envelopes via stdin.

Protocol Shape (NDJSON)

All messages are newline-delimited JSON objects with top-level type.

For streaming, the runtime envelope is:

{
  "type": "stream_event",
  "event": {
    "type": "content_block_delta",
    "index": 0,
    "delta": {"type": "text_delta", "text": "chunk"}
  }
}

Do not assume top-level content_block_delta envelopes in host parsing.

---

Emission Semantics (Critical)

Partial output behavior

• With --include-partial-messages: host receives stream_event payloads.
• Without it: host often receives only final assistant and result messages.

Host impact:

• If UI "Thinking/Writing" depends only on partial deltas, it may appear idle/blank unless --include-partial-messages is enabled.

Replay behavior

With --replay-user-messages, echoed user messages include replay markers:

{
  "type": "user",
  "message": {"role": "user", "content": [{"type": "text", "text": "ping"}]},
  "session_id": "...",
  "parent_tool_use_id": null,
  "uuid": "...",
  "isReplay": true
}

Host rule:

• Deduplicate using uuid (plus turn/session context if needed).

Result semantics

result.subtype == "success" does not mean no error by itself. Always evaluate is_error as authoritative:

{
  "type": "result",
  "subtype": "success",
  "is_error": true,
  "result": "Not logged in - Please run /login"
}

This can also accompany non-zero process exit status.

---

Request Lifecycles

Normal request (init -> response -> result)

1. Host starts process.
2. CLI emits system subtype:init.
3. Host sends user stdin message.
4. CLI may emit stream_event messages (if partial enabled).
5. CLI emits assistant message(s).
6. CLI may emit control_request (tool approval).
7. Host sends control_response.
8. CLI emits user tool_result echoes.
9. CLI emits terminal result.

Interrupted request

Preferred:

1. Host sends stdin control_request with request.subtype: "interrupt".
2. CLI emits control_response success.
3. CLI emits result for terminated turn.
4. Host sends next queued user message.

Interrupt during pending tool approval

Two valid strategies:

1. Cancel then interrupt:

• Send control_cancel_request for pending request_id.
• Send control_request interrupt.

2. Deny + interrupt in one response:

• Send control_response with behavior: "deny" and interrupt: true.

Pick one strategy and apply it consistently.

---

Stdout Message Types (CLI -> Host)

These are the host-relevant types to parse.

system

Common subtypes:

• init
• status
• informational
• api_error
• hook_started
• hook_progress
• hook_response
• stop_hook_summary
• task_notification
• turn_duration
• compact_boundary
• microcompact_boundary
• local_command

Typical init fields include: cwd, session_id, tools, mcp_servers, model, permissionMode, slash_commands, claude_code_version, agents, skills, plugins, uuid.

assistant

Contains complete assistant message blocks:

• text
• tool_use
• thinking (if enabled)

May include parent_tool_use_id for subagent/tool-threaded messages.

user

Used for:

• tool result echo blocks (type: tool_result)
• replayed user echo events when replay flag is enabled (isReplay: true)

stream_event

Contains nested event payload.

Event types:

• message_start
• content_block_start
• content_block_delta
• content_block_stop
• message_delta
• message_stop

Observed delta types:

• text_delta
• input_json_delta
• thinking_delta
• signature_delta
• citations_delta

control_request

Approval or control prompt from CLI, including:

• request.subtype: "can_use_tool"
• request_id
• tool details (tool_name, input, tool_use_id, optional decision_reason)

control_response

Control command acknowledgment emitted by CLI (for host-issued control requests like interrupt/set mode/model).

control_cancel_request

Cancellation signal path exists in protocol surface for pending control requests. Treat as control-plane event.

result

Terminal turn summary with:

• subtype
• is_error
• token/cost/turn metadata

Result subtypes:

• success
• error_during_execution
• error_max_turns
• error_max_budget_usd
• error_max_structured_output_retries

keep_alive

Heartbeat ping message.

tool_use_summary

Optional summarized tool-use event stream for condensed status rendering.

auth_status

Optional authentication status updates.

streamlined_text and streamlined_tool_use_summary

Optional condensed output channels. Useful for thin UIs; safe to ignore in fully structured hosts.

Observed Type and Subtype Surface (2.1.37)

Observed host-facing top-level type values (runtime + binary scan):

• system
• assistant
• user
• stream_event
• result
• control_request
• control_response
• control_cancel_request
• keep_alive
• tool_use_summary
• auth_status
• streamlined_text
• streamlined_tool_use_summary

Observed protocol-relevant subtype values from local 2.1.37 binary:

• api_error
• can_use_tool
• compact_boundary
• error
• error_during_execution
• error_max_budget_usd
• error_max_structured_output_retries
• error_max_turns
• hook_callback
• hook_progress
• hook_response
• hook_started
• informational
• init
• interrupt
• local_command
• mcp_message
• microcompact_boundary
• status
• stop_hook_summary
• success
• task_notification
• turn_duration

---

Stdin Message Types (Host -> CLI)

user

{
  "type": "user",
  "message": {
    "role": "user",
    "content": [{"type": "text", "text": "Your prompt"}]
  },
  "uuid": "optional-client-uuid"
}

control_request

{
  "type": "control_request",
  "request_id": "req_123",
  "request": {
    "subtype": "interrupt"
  }
}

Supported subtypes (host-facing):

• interrupt
• initialize
• set_permission_mode
• set_model
• set_max_thinking_tokens
• mcp_status
• mcp_message
• mcp_set_servers
• mcp_reconnect
• mcp_toggle
• rewind_files

control_response

Use for answering can_use_tool approval requests.

Allow:

{
  "type": "control_response",
  "response": {
    "subtype": "success",
    "request_id": "req_abc123",
    "response": {
      "behavior": "allow",
      "updatedInput": {"command": "ls -la"}
    }
  }
}

Deny:

{
  "type": "control_response",
  "response": {
    "subtype": "success",
    "request_id": "req_abc123",
    "response": {
      "behavior": "deny",
      "message": "User denied"
    }
  }
}

Deny + interrupt:

{
  "type": "control_response",
  "response": {
    "subtype": "success",
    "request_id": "req_abc123",
    "response": {
      "behavior": "deny",
      "message": "User denied and wants to stop",
      "interrupt": true
    }
  }
}

control_cancel_request

Cancel pending control request by request_id.

{
  "type": "control_cancel_request",
  "request_id": "req_abc123"
}

---

Tool Names and Input Fields

Common tool names and key inputs:

| Tool | Input Fields | |------|--------------| | Bash | command, description, timeout, run_in_background | | Read | file_path, offset, limit | | Write | file_path, content | | Edit | file_path, old_string, new_string, replace_all | | Glob | pattern, path | | Grep | pattern, path, glob, type, output_mode, -A, -B, -C, -i, -n | | WebFetch | url, prompt | | WebSearch | query, allowed_domains, blocked_domains | | Task | subagent_type, description, prompt, model, run_in_background, resume | | TaskOutput | task_id, block, timeout | | TaskStop | task_id | | NotebookEdit | notebook_path, new_source, cell_id, cell_type, edit_mode | | AskUserQuestion | questions | | EnterPlanMode | no params | | ExitPlanMode | allowedPrompts, pushToRemote | | Skill | skill, args | | TaskCreate | subject, description, activeForm, metadata | | TaskGet | taskId | | TaskUpdate | taskId, status, subject, description, owner, addBlocks, addBlockedBy | | TaskList | no params |

---

Liveness Mapping for Host UI

Recommended runtime state mapping:

• process started -> starting
• system:init -> ready
• stream_event or in-flight assistant turn -> thinking/streaming
• control_request can_use_tool -> awaiting_approval
• result -> idle (or error if is_error=true)
• process exit / fatal stderr / repeated auth failures -> disconnected/error

Always expose last event timestamp so users can trust the session is alive.

---

Process Interruption

Preferred: protocol interrupt (control_request subtype:interrupt).

Fallback: OS signal only if protocol interrupt path fails or times out.

kill(processId, SIGINT);
process.terminate();
process.waitForFinished(500);
if (process.state() != NotRunning) process.kill();

---

Replay and Partial Handling Rules for Hosts

1. Treat replayed user messages as acknowledgments, not new user intent.
2. Deduplicate by uuid before rendering persistent chat bubbles.
3. Merge stream_event deltas into one in-progress assistant draft per turn.
4. Replace/complete draft on final assistant or result.
5. Do not infer completion from lack of partial events if partial streaming is disabled.

---

Debugging

DEBUG_CLAUDE_AGENT_SDK=1 claude --debug ...

Capture debug logs:

claude ... --debug --debug-file /tmp/claude-debug.log

---

Protocol Discovery (Installed Binary)

Inspect local type and subtype surfaces for the exact installed version:

strings /path/to/claude | grep -o 'type:"[a-z_][a-z_]*"' | sort -u
strings /path/to/claude | grep -o 'subtype:"[a-z_][a-z_]*"' | sort -u

Sanity-check stream-json runtime quickly:

tmpid=$(uuidgen | tr '[:upper:]' '[:lower:]')
printf '%s\n' '{"type":"user","message":{"role":"user","content":[{"type":"text","text":"ping"}]},"uuid":"'"$tmpid"'"}' \
| claude -p --output-format stream-json --input-format stream-json --verbose --replay-user-messages --permission-prompt-tool stdio --session-id "$tmpid"

---

References

• Headless mode: https://docs.anthropic.com/en/docs/claude-code/headless
• CLI reference: https://docs.anthropic.com/en/docs/claude-code/cli