Singularity Container Manager Skill

Purpose

Provide Singularity container management for HPC-compatible containerized execution.

Capabilities

• Container building from recipes
• Registry pull and caching
• Bind mount configuration
• GPU passthrough
• MPI integration
• Security compliance for HPC

Usage Guidelines

• Build containers from definition files
• Cache containers for repeated use
• Configure bind mounts appropriately
• Enable GPU for accelerated workloads
• Integrate with MPI for parallel computing
• Ensure HPC security compliance

Dependencies

• Singularity/Apptainer
• Docker
• BioContainers

Process Integration

• Reproducible Research Workflow (reproducible-research)
• All analysis pipelines