bio-single-cell-metabolite-communication
Analyze metabolite-mediated cell-cell communication using MeboCost for metabolic signaling inference between cell types. Predict metabolite secretion and sensing patterns from scRNA-seq data. Use when…
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Analyze metabolite-mediated cell-cell communication using MeboCost for metabolic signaling inference between cell types. Predict metabolite secretion and sensing patterns from scRNA-seq data. Use when…
Analyze cell-cell communication in spatial transcriptomics data using ligand-receptor analysis with Squidpy. Infer intercellular signaling, identify communication pathways, and visualize interaction n…
Build spatial neighbor graphs for spatial transcriptomics data using Squidpy. Compute k-nearest neighbors, Delaunay triangulation, and radius-based connectivity for downstream spatial analyses. Use wh…
Access and analyze AlphaFold protein structure predictions. Use when predicted structures are needed for proteins without experimental structures, or for confidence scores (pLDDT).
Clusters genes by temporal expression profile shape using Mfuzz soft clustering, TCseq, and DEGreport degPatterns. Groups co-regulated genes into shared trajectory patterns via fuzzy c-means or hierar…
This skill should be used when the user asks to "create chatbot", "virtual agent", "VA topic", "NLU", "conversation", "chat flow", "topic block", or any ServiceNow Virtual Agent development.
This skill should be used when the user asks to "consolidate notes", "summarize ainotes", "clean up notes", "ainotes", or wants to consolidate accumulated agent observations into a compact summary.
AI-powered job search assistant. Scan job listings, track applications, maintain dream company lists, and generate tailored resumes and cover letters. Use when the user wants to find jobs, run a job s…
Infer cell-cell communication networks from scRNA-seq data using CellChat, NicheNet, and LIANA for ligand-receptor interaction analysis. Use when inferring ligand-receptor interactions between cell ty…
Identify spatial domains and tissue regions in spatial transcriptomics data using Squidpy and Scanpy. Cluster spots considering both expression and spatial context to define anatomical regions. Use wh…
Analyzes spatial proteomics data from CODEX, IMC, and MIBI platforms including cell segmentation and protein colocalization. Use when working with multiplexed imaging data, analyzing protein spatial p…
Visualize spatial transcriptomics data using Squidpy and Scanpy. Create tissue plots with gene expression, clusters, and annotations overlaid on histology images. Use when visualizing spatial expressi…
Deep learning-based variant calling with Google DeepVariant. Provides high accuracy for germline SNPs and indels from Illumina, PacBio, and ONT data. Use when calling variants with DeepVariant deep le…
It generates multiple funny responses to a given topic for a Japanese-style pun or joke. It is used when keywords such as 'dajare', 'topic', 'make a joke', or a topic for a dajare is presented.
Use when the user wants to save brand knowledge — campaign learnings, competitive intelligence, brand guidelines, or performance insights — to persistent memory (vector database) for future RAG retrie…
Use when generating animated game sprites, creating sprite sheets, building character animations for 2D games, or needing consistent multi-frame pixel art from AI image generation models
Infer developmental trajectories and pseudotime from single-cell RNA-seq data using Monocle3, Slingshot, and scVelo for RNA velocity analysis. Use when inferring developmental trajectories or pseudoti…
Predict miRNA target genes using sequence-based algorithms and database lookups. Use when identifying potential mRNA targets of differentially expressed or functionally important miRNAs.
Compute spatial statistics for spatial transcriptomics data using Squidpy. Calculate Moran's I, Geary's C, spatial autocorrelation, co-occurrence analysis, and neighborhood enrichment. Use when comput…
Analyze single-cell TCR and BCR data integrated with gene expression using scirpy. Use when working with 10x Genomics VDJ data alongside scRNA-seq or when integrating immune receptor information with …
Discovers periodic signals of unknown period in time-series omics data using Lomb-Scargle periodograms (scipy), autocorrelation, and wavelet time-frequency decomposition (pywt). Identifies dominant fr…
Generate crisp, high-quality images with perfect typography and precise geometric layouts using HTML/CSS. Use when creating social cards, diagrams, certificates, UI mockups, code screenshots, or any i…
Merge multiple video files into one video. Use when user wants to 合并视频, 拼接视频, 视频合并, 视频拼接, 把视频合在一起, 连接视频, join videos, merge videos, combine videos, concatenate videos.
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