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This skill should be used when users need to infer chromatin states from histone modification ChIP-seq data using chromHMM. It provides workflows for chromatin state segmentation, model training, stat…
Analyzes meeting transcripts and recordings to uncover behavioral patterns, communication insights, and actionable feedback. Identifies when you avoid conflict, use filler words, dominate conversation…
This skill performs protein-mediated regulatory community analysis from ChIA-PET datasets and provide a way for visualizing the communities. Use this skill when you have a annotated peak file (in BED …
Toolkit for creating animated GIFs optimized for Slack, with validators for size constraints and composable animation primitives. This skill applies when users request animated GIFs or emoji animation…
Extended thinking mode. USE WHEN be creative, deep thinking, deep thinking, extended reasoning. SkillSearch('becreative') for docs.
Generate research-grounded visuals using the InfoGenius pipeline. Use when creating infographics, diagrams, educational visuals, or any image that benefits from factual accuracy. Supports 8 visual sty…
Agent assistance skill that provides stuck detection, memory management, and session learning capabilities for AI agents Trigger terms: agent stuck, loop detected, session memory, agent learning, cond…
Master advanced AgentDB features including QUIC synchronization, multi-database management, custom distance metrics, hybrid search, and distributed systems integration. Use when building distributed A…
This skill should be used when users need to identify topologically associating domains (TADs) from Hi-C data in .mcools (or .cool) files or when users want to visualize the TAD in target genome loci.…
This skill performs transcription factor (TF) footprint analysis using TOBIAS on ATAC-seq data. It corrects Tn5 sequence bias, quantifies TF occupancy at motif sites, generates footprint scores, and o…
Prepares meeting materials by gathering context from Notion, enriching with Claude research, and creating both an internal pre-read and external agenda saved to Notion. Helps you arrive prepared with …
Improves the quality of images, especially screenshots, by enhancing resolution, sharpness, and clarity. Perfect for preparing images for presentations, documentation, or social media posts.
Voice server management. USE WHEN voice server, TTS server, voice notification, prosody.
Adds a new AI platform to DeepWork with adapter, templates, and tests. Use when integrating Cursor, Windsurf, or other AI coding tools.
Cross-model context handoff via expert council. 40% token reduction, 9.5/10 recall, 97% cross-domain preservation.
Quantum-resistant, self-learning version control for AI agents with ReasoningBank intelligence and multi-agent coordination
This skill performs PCA-based A/B compartments calling on Hi-C .mcool datasets using pre-defined MCP tools from the cooler-tools, cooltools-tools, and plot-hic-tools servers.
This skill provides a complete pipeline for integrating CpG methylation data with chromatin features such as ATAC-seq signal, H3K27ac, H3K4me3, or other histone marks/TF signals.
This skill performs genome-wide DNA methylation profiling. It supports single-sample and multi-sample workflows to compute methylation density distributions, genomic feature distribution of the methyl…
Generate web assets including favicons, app icons (PWA), and social media meta images (Open Graph) for Facebook, Twitter, WhatsApp, and LinkedIn. Use when users need icons, favicons, social sharing im…
Step-by-step checklist and best practices for implementing new AI agent tools in the omer-akben portfolio. Use when creating new agent tools, API routes, or extending agent capabilities.
[Aesthetics] Extracts recurring visual patterns from references: contrast habits, shapes, density/whitespace balance, rhythm, textures. Produces Aesthetic Pattern Library as Data-Sheet nodes in Brain …
Master advanced AgentDB features including QUIC synchronization, multi-database management, custom distance metrics, hybrid search, and distributed systems integration. Use when building distributed A…
Quantum-resistant, self-learning version control for AI agents with ReasoningBank intelligence and multi-agent coordination