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introduction-logic-builder
Builds background-gap-objective logic for biomedical manuscript introductions with clear study positioning and disciplined narrative structure.
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Skill Directory
AI Skill Directory
Browse curated skills with source links, package snapshots, README assets and install signals in one calm, searchable catalog.
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latex-manuscript-format-converter
Converts existing manuscript content into LaTeX format aligned with a target journal, conference, or template while preserving manuscript meaning and structural integrity.
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limitation-and-risk-writer
Acknowledges limitations in sample, design, measurement, and validation in a professional way that improves credibility without undermining the whole paper. Use when writing the limitations paragraph …
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md-analysis-planner
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mesh-generation
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metagenome-functional-profiling
Functional annotation of metagenomic data using HUMAnN 3 for pathway abundance, Prokka for gene prediction, and eggNOG-mapper for ortholog assignment.
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methods-section-writer
Turns your protocol and analysis workflow into publication-ready Methods text. Use when writing or revising the Methods section of a biomedical manuscript, ensuring it complies with reporting guidelin…
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ncbi-eutilities-assistant
Query NCBI Entrez databases through official E-utilities with deterministic search, summary, fetch, link, and history workflows.
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introduction-section-writer
Writes the full Introduction section of a biomedical manuscript based on an approved or sufficiently clear study logic, while preserving evidence boundaries and introduction discipline.
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lay-summary-for-cross-disciplinary-teams
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linear-solvers
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mediation-meta-analyst
Meta-analysis frameworks and methods for mediation studies
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metagenome-assembly
De novo assembly of metagenomic contigs from short reads using MEGAHIT or metaSPAdes.
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metagenome-host-removal
Remove host-derived reads from metagenomic samples by aligning to a host reference genome and extracting unmapped pairs.
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miwrite-data
Local-only qualitative analysis for interviews, field notes, focus groups, and mixed text material.
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nextflow-development
Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on…
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lab-prep-calculations
Perform pre-experiment calculations and generate step-by-step preparation protocols for dilutions, solution preparation, dissolution, and % concentrations when planning formulations and lab prep workf…
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ligandmpnn
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managed-model-endpoints
Register a model service in the managed family — a local model server container the daemon starts/stops on demand, or a remote upstream model API (https). Read the runbook, allocate a port (local only…
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medical-english-precision-editor
Improves medical English precision without changing the underlying facts, evidence boundaries, or intended scientific meaning.
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metagenome-binning
Recover metagenome-assembled genomes (MAGs) from contigs using MetaBAT2, refine with DAS Tool, and assess quality with CheckM2.
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metagenome-taxonomic-profiling
Profile microbial community composition from shotgun metagenomic reads using Kraken2/Bracken or MetaPhlAn 4.
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nanogpt
Educational GPT implementation in ~300 lines. Reproduces GPT-2 (124M) on OpenWebText. Clean, hackable code for learning transformers. By Andrej Karpathy. Perfect for understanding GPT architecture fro…
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ngs-quality-control
Raw read quality assessment with FastQC and multi-sample report aggregation with MultiQC.
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