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genome-alignment-qc
Assess alignment quality with coverage depth, mapping rates, insert size, and on-target metrics using samtools, mosdepth, and picard.
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Skill Directory
AI Skill Directory
Browse curated skills with source links, package snapshots, README assets and install signals in one calm, searchable catalog.
personTashanworldAPI key: unconfirmed
genome-variant-calling
Call SNVs and indels from aligned BAMs using GATK HaplotypeCaller or DeepVariant with optional GVCF output for joint genotyping.
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personTashanworldAPI key: unconfirmed
grant-specific-aims-writer
Writes Specific Aims pages for grant applications. Use when drafting or revising the Specific Aims page (NIH R01/R21/R03), NSF Project Summary, or equivalent for any major funding agency. Also trigger…
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personTashanworldAPI key: unconfirmed
grpo-rl-training
Expert guidance for GRPO/RL fine-tuning with TRL for reasoning and task-specific model training
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personTashanworldAPI key: unconfirmed
peft-fine-tuning
Parameter-efficient fine-tuning for LLMs using LoRA, QLoRA, and 25+ methods. Use when fine-tuning large models (7B-70B) with limited GPU memory, when you need to train <1% of parameters with minimal a…
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personTashanworldAPI key: unconfirmed
pipeline-manifest
Build a traceability manifest linking analysis scripts to inputs, outputs, and manuscript figures or tables. Use when documenting a computational pipeline or locating the source of a reported artefact…
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personTashanworldAPI key: unconfirmed
pm-fulltext
Find full-text download links for a PubMed paper by PMID - DOI, PMC open access, Sci-Hub, and publisher links. Use when user wants to read or download a paper's full text.
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personTashanworldAPI key: unconfirmed
precision-medicine-therapeutics
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personTashanworldAPI key: unconfirmed
genome-read-alignment
Align short reads to a reference genome with BWA-MEM2, sort and index with samtools, and mark duplicates with picard.
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personTashanworldAPI key: unconfirmed
genome-variant-filtering
Filter raw variant calls using GATK VQSR, GATK hard filters, or bcftools expression-based filtering.
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personTashanworldAPI key: unconfirmed
grant-writing-eu
Drafting and reviewing European fellowship and grant applications (Marie Skłodowska-Curie Actions, Horizon Europe, ERC, EIC). Covers the Excellence/Impact/Implementation triad, gender dimension and se…
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personxiaojiankezzAPI key: unconfirmed
文档一致性检查
在本机检查 DOCX、PPTX、XLSX 和 PDF 交付材料中的金额、百分比、日期、单位及同比环比冲突，并输出带文件位置的易读报告。用户要求跨文档核对、交付前质检、检查 PPT 与 Excel 或保护敏感文档时使用。
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personTashanworldAPI key: unconfirmed
phylogenetics
Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML). Visualize with ETE3 or FigTree. For evolutionary analysis, microbial g…
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personTashanworldAPI key: unconfirmed
pm-advanced-search
Perform advanced PubMed search with field qualifiers - author, title, journal, MeSH, date range, article type. Constructs proper PubMed query syntax from natural language. Use for precise filtered sea…
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personTashanworldAPI key: unconfirmed
pm-navigate-pages
Navigate PubMed search result pages or change sort order. Use when user wants to see more results or change ordering.
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personTashanworldAPI key: unconfirmed
professor-fit-analyzer
analyze a professor from google scholar, publication lists, personal websites, lab pages, and field-specific bibliographic databases (e.g., DBLP, PubMed, SSRN, PhilPapers, MathSciNet, arXiv, Scopus) t…
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personTashanworldAPI key: unconfirmed
genome-variant-annotation
Annotate variants with functional effects using SnpEff or Ensembl VEP, adding gene impact, population frequencies, and clinical significance.
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personTashanworldAPI key: unconfirmed
geomaster
Comprehensive geospatial science skill covering remote sensing, GIS, spatial analysis, machine learning for earth observation, and 30+ scientific domains. Supports satellite imagery processing (Sentin…
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personTashanworldAPI key: unconfirmed
graphical-abstract-generator
Converts a biomedical study storyline into a graphical abstract and, when direct image capability is available, generates the graphical abstract directly; otherwise it falls back to prompts, Mermaid f…
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personTashanworldAPI key: unconfirmed
pediatric-growth-charts
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personTashanworldAPI key: unconfirmed
pi-deep-research
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personTashanworldAPI key: unconfirmed
pm-export
Export PubMed paper(s) to Zotero or save as RIS file. Supports single paper by PMID or batch export from search results. Use when user wants to save papers to their reference manager.
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personTashanworldAPI key: unconfirmed
polars-bio
High-performance genomic interval operations and bioinformatics file I/O on Polars DataFrames. Overlap, nearest, merge, coverage, complement, subtract for BED/VCF/BAM/GFF intervals. Streaming, cloud-n…
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personTashanworldAPI key: unconfirmed
project-onboarding
Use this skill whenever a user wants to adopt the scicomp-research-skills framework on an EXISTING project (paper, software library, analysis repo) rather than starting from scratch -- OR when the age…
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