Skill Directory

AI Skill Directory

Browse curated skills with source links, package snapshots, README assets and install signals in one calm, searchable catalog.

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project-safety

Install or reconcile research-project safety rules and protected folder boundaries for data, code, outputs, and paper sources. Use when a project lacks guardrails or is being migrated into the governe…

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proofread

Proofread a LaTeX academic paper across eleven language, notation, citation, and consistency categories. Use when the requested task is bounded proofreading rather than substantive rewriting, clarity …

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pubmed-cli

Search PubMed, fetch article metadata, traverse citation graphs, and look up MeSH terms from the command line. Use when: (1) Searching PubMed with Boolean/MeSH queries, (2) Fetching article details by…

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pysam

Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.

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pytorch-fsdp2

Adds PyTorch FSDP2 (fully_shard) to training scripts with correct init, sharding, mixed precision/offload config, and distributed checkpointing. Use when models exceed single-GPU memory or when you ne…

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quantizing-models-bitsandbytes

Quantizes LLMs to 8-bit or 4-bit for 50-75% memory reduction with minimal accuracy loss. Use when GPU memory is limited, need to fit larger models, or want faster inference. Supports INT8, NF4, FP4 fo…

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ray-data

Scalable data processing for ML workloads. Streaming execution across CPU/GPU, supports Parquet/CSV/JSON/images. Integrates with Ray Train, PyTorch, TensorFlow. Scales from single machine to 100s of n…

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proof-architect

Structured methodology for constructing and verifying mathematical proofs in statistical research

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pytdc

Therapeutics Data Commons. AI-ready drug discovery datasets (ADME, toxicity, DTI), benchmarks, scaffold splits, molecular oracles, for therapeutic ML and pharmacological prediction.

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pytorch-lightning

High-level PyTorch framework with Trainer class, automatic distributed training (DDP/FSDP/DeepSpeed), callbacks system, and minimal boilerplate. Scales from laptop to supercomputer with same code. Use…

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quarto-deck

Generate a Reveal.js HTML presentation from Markdown. Use when the user asks to generate a Reveal.js HTML presentation from Markdown.

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ray-train

Distributed training orchestration across clusters. Scales PyTorch/TensorFlow/HuggingFace from laptop to 1000s of nodes. Built-in hyperparameter tuning with Ray Tune, fault tolerance, elastic scaling.…

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proof-writer

數學證明撰寫技能 — 從主張提取到 LaTeX 排版的完整證明工作流。當使用者需要撰寫或驗證數學定理、引理、命題的形式證明,或需要推導公式、整理理論分析時,一定要使用此技能。觸發詞包括:數學證明、prove、theorem、lemma、proposition、推導、理論分析、寫 proof、LaTeX 數學、formal proof。適用於機器學習理論、統計學習理論、最佳化等需要嚴謹數學推導的場景…

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pydeseq2

Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis.

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pytorch-fsdp

Expert guidance for Fully Sharded Data Parallel training with PyTorch FSDP - parameter sharding, mixed precision, CPU offloading, FSDP2

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pyvene-interventions

Provides guidance for performing causal interventions on PyTorch models using pyvene's declarative intervention framework. Use when conducting causal tracing, activation patching, interchange interven…

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report-arbitration

Arbitrate conflicting reports into a source-grounded claim audit and reconciled synthesis.

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