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Index entry for an upstream research Skill intended for research work involving meta apply. Maintained upstream by wanshuiyin; source files are not included in this package.
Summarize deep research results into markdown report, cover all fields, skip uncertain values.
Use before marking any workflow stage as completed — verify outputs exist, are valid, and meet success criteria defined in workflow-state.json
Export systematic review as manuscript, data package, PRISMA checklist, or archive. Assembles all review data into publication-ready outputs. Use when the user types `revman export`.
Generate PRISMA 2020 flow diagrams for systematic reviews. Renders the study selection flowchart from screening numbers. Use when the user types `revman prisma`.
Writing scientific/research code at senior engineer level. Covers project structure, module organization, function design, type hints, naming, error handling, separation of concerns, idiomatic Python/…
Build or revise scientific talks, posters, and Beamer slide decks from papers, codebases, figures, or LaTeX templates. Use when Codex needs to turn technical research into a clear presentation, preser…
Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.
Index entry for an upstream research Skill intended for research work involving meta optimize. Maintained upstream by wanshuiyin; source files are not included in this package.
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Audit experiment specs and empirical pipelines for claim-threatening validity and reproducibility failures.
Generate forest plots for meta-analysis. Renders publication-quality forest plots from synthesis data. Use when the user types `revman forest`.
Study-centric data management for systematic reviews. Add, edit, view, import, and remove studies with arm-level and outcome-level data. Use when the user types `revman studio`.
Senior-level debugging specifically for scientific code failure modes. Covers CUDA out-of-memory errors, numerical instability (NaN/Inf propagation), reproducibility failures, multiprocessing/GIL issu…
Simplify scientific code, LaTeX, and technical prose while preserving exact behavior, results, and meaning. Use when Codex needs to remove duplication, reduce unnecessary abstraction, clean up AI-gene…
Comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival. Use this skill when working with censored survival data, performing time-to-event analysis, fitt…
Improve academic paper writing quality for ML/CV/NLP-style papers with clear section structure, paragraph flow, and reviewer-facing presentation. Use when drafting or revising Abstract, Introduction, …
Drafting point-by-point responses to peer reviewer comments for medical/biomedical journals. Covers tone calibration (firm but diplomatic), structuring the response letter, handling unreasonable comme…
RevMan data calculator for systematic reviews. Computes SD from SE/CI/IQR/range, calculates contrast data (OR/RR/RD/MD/SMD) from arm data, and combines study arms. Use when the user types `revman calc…
Generate funnel plots for assessing publication bias. Renders funnel plots with pseudo-95% CI lines and Egger's test. Use when the user types `revman funnel`.
RNN+Transformer hybrid with O(n) inference. Linear time, infinite context, no KV cache. Train like GPT (parallel), infer like RNN (sequential). Linux Foundation AI project. Production at Windows, Offi…
Create and validate scientific figures in Python using Matplotlib and SciencePlots. Use when the user asks to plot data, generate a paper figure, reproduce a chart, or revise a scientific plot's layou…
Create publication figures with matplotlib/seaborn/plotly. Multi-panel layouts, error bars, significance markers, colorblind-safe, export PDF/EPS/TIFF, for journal-ready scientific plots.
AI-powered Scrum Master and Enterprise Agility Coach based on Jeff Sutherland, Taiichi Ohno, and First Principles thinking. Use when user needs help with Scrum, sprint analysis, backlog refinement, sc…