fusion-gene-detector
Gene fusion detection skill for oncology applications with multiple caller integration
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Gene fusion detection skill for oncology applications with multiple caller integration
Human Phenotype Ontology skill for phenotype-driven gene prioritization
Kraken2 taxonomic classification skill for rapid metagenomic read assignment
Salmon pseudo-alignment skill for fast and accurate transcript quantification
Variant Effect Predictor skill for comprehensive variant annotation with clinical database integration
QIIME2 microbiome analysis skill for 16S rRNA profiling and diversity analysis
Life Cycle Assessment skill for environmental impact evaluation and sustainability analysis
Hydraulic analysis skill for open channel flow, culverts, and pipe networks
Gene Set Enrichment Analysis skill for functional annotation and pathway interpretation
MaxQuant mass spectrometry skill for protein identification and quantification
MEGAHIT metagenomic assembly skill for reconstructing genomes from short reads
Seurat single-cell analysis skill for clustering, annotation, and trajectory analysis
STAR alignment skill for splice-aware RNA-seq read mapping with comprehensive QC metrics
Crystallization process design skill for nucleation control, crystal size distribution, and equipment selection
Waste minimization analysis skill for source reduction, recycling, and treatment optimization
Steel connection design skill for bolted and welded connections per AISC specifications
GATK best practices skill for germline and somatic variant calling with joint genotyping
MAGeCK CRISPR screen analysis skill for gene essentiality scoring
MetaPhlAn metagenomic profiling skill for species-level community composition
Structural variant detection skill for identifying CNVs, inversions, translocations, and complex rearrangements
Tumor mutation burden and microsatellite instability calculation skill for immunotherapy biomarkers
Green chemistry metrics calculation skill for atom economy, E-factor, and process mass intensity
Civil 3D surface analysis skill for terrain modeling, earthwork, and drainage analysis
Expert skill for membrane filtration and separation system design including process selection, flux calculations, fouling analysis, and concentrate management.