metagenome-functional-profiling
Functional annotation of metagenomic data using HUMAnN 3 for pathway abundance, Prokka for gene prediction, and eggNOG-mapper for ortholog assignment.
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Functional annotation of metagenomic data using HUMAnN 3 for pathway abundance, Prokka for gene prediction, and eggNOG-mapper for ortholog assignment.
Turns your protocol and analysis workflow into publication-ready Methods text. Use when writing or revising the Methods section of a biomedical manuscript, ensuring it complies with reporting guidelin…
Query NCBI Entrez databases through official E-utilities with deterministic search, summary, fetch, link, and history workflows.
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Remove host-derived reads from metagenomic samples by aligning to a host reference genome and extracting unmapped pairs.
Local-only qualitative analysis for interviews, field notes, focus groups, and mixed text material.
Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on…
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Automates Risk of Bias 2 (ROB2) assessment for RCT papers by analyzing text against specific domains and synthesizing a report. Use when you need to assess the quality of a clinical trial paper or eva…
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Use this skill when the user asks for 电商选品、商品决策、选品评分、带货选品、SKU分析,或要为电商、广告、营销、短剧、漫剧、带货与种草内容完成电商选品决策助手。它服务中小商家、品类运营和直播选品团队:接收候选商品、成本、毛利、库存、退货原因、受众和已有数据,交付基于用户提供数据的评分表、风险、内容难度与验证计划。特色是只基于给定事实做决策,不冒充实时市场数据…
Profile microbial community composition from shotgun metagenomic reads using Kraken2/Bracken or MetaPhlAn 4.
Educational GPT implementation in ~300 lines. Reproduces GPT-2 (124M) on OpenWebText. Clean, hackable code for learning transformers. By Andrej Karpathy. Perfect for understanding GPT architecture fro…
Raw read quality assessment with FastQC and multi-sample report aggregation with MultiQC.
Numerical algorithms and computational techniques for statistics
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Use this skill when the user asks for Seedance 2.0、即梦视频、视频提示词、文生视频、图生视频,或要为电商、广告、营销、短剧、漫剧、带货与种草内容完成Seedance 2.0 提示词专家。它服务AI视频创作者、广告导演和电商内容团队:接收创意目标、主体、场景、动作、镜头、时长和参考素材,交付结构化提示词、镜头运动、主体动作、光线、负面约束和模式建议。…
Use this skill when the user asks for 跨境电商、内容本地化、Amazon、TikTok Shop、海外营销,或要为电商、广告、营销、短剧、漫剧、带货与种草内容完成跨境电商内容本地化。它服务Amazon、TikTok Shop、独立站和出海品牌团队:接收商品事实、目标国家、语言、平台、品牌语气和禁用声明,交付本地化卖点、平台标题、图片文字、视频口播和文化风险清单…