Scan to join WeChat groupBrowse curated skills with source links, package snapshots, README assets and install signals in one calm, searchable catalog.
Read/write SAM/BAM/CRAM, VCF/BCF, FASTA/FASTQ. Region queries, pileup, variant filtering, read groups. Python htslib wrapper exposing samtools/bcftools CLI. Use STAR/BWA for alignment; GATK/DeepVarian…
Write competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC. Agency-specific formatting, review criteria, budget preparation, broader impacts, significance statements, innovation na…
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Creative research ideation and exploration. Use for open-ended brainstorming sessions, exploring interdisciplinary connections, challenging assumptions, or identifying research gaps. Best for early-st…
Statistical visualization on matplotlib with native pandas support. Auto aggregation, CIs, grouping for distributions (histplot, kdeplot), categorical (boxplot, violinplot), relational (scatterplot, l…
Splice-aware RNA-seq aligner producing sorted BAM and splice junction tables. Builds genome index, runs two-pass alignment for better junctions. Outputs sorted BAM, junctions (SJ.out.tab), stats (Log.…
Use parallel subagents for large-scale paper screening and deep dive analysis
Index entry for an upstream research Skill intended for research work involving abinit. Maintained upstream by Hello-QM; source files are not included in this package.
Apply deterministic Elo updates for one completed tournament batch, persist touched hypotheses, and write the ranking update receipt.
Generate the final research overview from the top-ranked hypotheses.
Interpret the user's high-level research intent into `RUN_POLICY.yaml` and `state/POLICY_DECISION.json`.
Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research…
Statistical visualization on matplotlib + pandas. Distributions (histplot, kdeplot, violin, box), relational (scatter, line), categorical, regression, correlation heatmaps. Auto aggregation/CIs. Use p…
End-to-end statistical writing assistant for LaTeX - draft title/abstract/keywords, expand outlines into sections, audit manuscripts, write reviewer reports and response letters, and scaffold book man…
Python library for single-particle tracking (SPT) in video microscopy via the Crocker-Grier algorithm. Locate particles (fluorescent spots, colloids, vesicles, cells) per frame, link into trajectories…
Index entry for an upstream research Skill intended for planning ablation studies and comparing experimental components. Maintained upstream by wanshuiyin; source files are not included in this packag…
Generate a `ResearchPlan` from `input.md` or equivalent raw research input.
Research Radar Update
CLI toolkit for SAM/BAM/CRAM: sort, index, convert, filter, QC alignments. Core commands: view, sort, index, flagstat, stats, depth, markdup, merge. Required between alignment and variant/peak calling…
Python image processing for microscopy and bioimage analysis. Read/write images, filter (Gaussian, median, LoG), segment (thresholding, watershed, active contours), measure region properties, detect f…
PubMed search with keyword optimization, result parsing, and metadata extraction
Python statistical modeling: regression (OLS, WLS, GLM), discrete (Logit, Poisson, NegBin), time series (ARIMA, SARIMAX, VAR), with rigorous inference, diagnostics, and hypothesis tests. Use scikit-le…
Smart backward and forward citation following via Semantic Scholar, with relevance filtering and deduplication
Index entry for an upstream research Skill intended for planning or drafting research abstracts. Maintained upstream by brycewang-stanford; source files are not included in this package.