Skill Directory

AI Skill Directory

Browse curated skills with source links, package snapshots, README assets and install signals in one calm, searchable catalog.

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chem-db-qmof

Query the Quantum MOF (QMOF) database via Materials Project's MPContribs platform for DFT-computed properties (bandgap) and optimized crystal structures of Metal-Organic Frameworks.

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chem-dft-orca-optimization

Run DFT geometry optimization (minimization or TS search) on a molecular structure using ORCA via SCINE/ReaDuct wrapper.

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chem-hazard-toxicity

Extract explicit safety warnings, GHS classifications, LD50 toxicity profiles, and acute oral toxicity triage from PubChem PUG VIEW.

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chem-neb-barrier

Calculate activation barrier using Nudged Elastic Band (NEB) method with MLIPs.

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chem-react-ot

Generate transition state structures for chemical reactions using React-OT.

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chem-sorption-gcmc

Calculates gas adsorption isotherms via BVT/GCMC Monte Carlo simulations in a porous framework using MLIP.

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chem-spectrum-matcher

Match an experimental spectrum (1H NMR, 13C NMR, IR) against predicted or database reference spectra for candidate ranking and structure confirmation. Supports local catalog lookup, public database fa…

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chem-vibration

Calculate vibrational frequencies, normal modes, zero-point energy, and IR spectra of molecules and clusters using MLIPs.

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chem-db-spectra

Search and download experimental InfraRed (IR), Mass spectra, and UV-Vis spectra data (JCAMP-DX format) for molecules.

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chem-dft-orca-singlepoint

Run a DFT or Coupled Cluster single-point energy calculation (with optional gradients/Hessian) on a molecular structure with ORCA through SCINE wrapper.

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chem-irc-verification

Verify non-periodic molecular TS connectivity with forward/reverse IRC using endpoint connectivity and RMSD checks.

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chem-nmr-analysis

Scripts for Wasserstein deconvolution of 1H NMR mixture spectra against reference spectra, reaction product prediction, time-series kinetics, and spectral plotting.

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chem-similarity-search

Find structurally similar chemical compounds using PubChem's 2D fast similarity engine via the PUG-REST API.

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chem-sorption-relax

Prepares supercells for porous frameworks based on minimum interplanar distance and relaxes them using standard MLIP relaxation tools.

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chem-thermochemistry

Compute gas-phase thermodynamic quantities (H, S, G) and reaction thermochemistry (ΔH, ΔS, ΔG) using MLIPs with the ideal-gas/rigid-rotor/harmonic-oscillator approximation.

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chem-dft-orca-advanced-calculation

Write and run custom ORCA input files for advanced electronic structure methods or settings not available through the SCINE wrapper, including multi-reference methods, excited states, relativistic eff…

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chem-docking-void

Dock small-molecule guests into a porous host material using the VOID library (Voronoi Clustering), generating multiple 3D conformers with RDKit and ranking generated complexes.

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chem-msms-predict

Predict LC-MS/MS (MS2, tandem mass spectra) from SMILES via ICEBERG, a two-stage deep neural network. Outputs predicted m/z vs intensity spectrum, fragment ion SMILES, and a spectrum plot.

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chem-nmr-predict

Predict 1H NMR spectra from SMILES strings via NMRdb.org SPINUS neural network prediction and nmrsim quantum mechanical spin simulation.

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chem-solution-md

Set up and run molecular dynamics simulations of molecules in explicit solvent boxes using Packmol for box construction and MLIPs for dynamics.

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chem-sorption-widom

Calculates Henry coefficient and heat of adsorption for a gas in a porous framework using Widom insertion with any supported MLIP.

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chem-ts-optimization

Optimize non-periodic molecular TS guesses and verify first-order saddle point from vibrational modes.

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china-sport-science-and-technology

Use when targeting 《中国体育科技》(China Sport Science and Technology) — the CSSCI applied/competitive sport-science journal from the China Institute of Sport Science (国家体育总局体育科学研究所), sibling to 《体育科学》. Best…

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