IGV Genome Browser Skill

Purpose

Enable IGV integration for interactive genome visualization and review.

Capabilities

• BAM/VCF/BED visualization
• Batch screenshot generation
• Session management
• Track customization
• Region navigation
• Multi-sample comparison

Usage Guidelines

• Load appropriate reference genome
• Configure tracks for analysis needs
• Generate batch screenshots for reports
• Save sessions for reproducibility
• Navigate to regions of interest
• Compare multiple samples visually

Dependencies

• IGV
• IGV.js
• JBrowse2

Process Integration

• Clinical Variant Interpretation (clinical-variant-interpretation)
• Tumor Molecular Profiling (tumor-molecular-profiling)
• Whole Genome Sequencing Pipeline (wgs-analysis-pipeline)