RAG Architecture

Purpose

Design a Retrieval-Augmented Generation pipeline, including document processing, chunking strategy, embedding pipeline, vector database selection, retrieval optimization, and context assembly.

Scope Constraints

Reads source document metadata, query patterns, and infrastructure requirements for pipeline design analysis. Does not execute embedding operations, provision vector databases, or access production data directly.

Inputs

Source documents (type, volume, update frequency)
Query patterns (user questions, search terms, structured queries)
Quality requirements (relevance threshold, hallucination tolerance)
Latency requirements (real-time, near-real-time, batch)
Cost constraints (embedding costs, storage costs, query costs)

Input Sanitization

No user-provided values are used in commands or file paths. All inputs are treated as read-only analysis targets.

Procedure

Progress Checklist

[ ] Step 1: Analyze source documents
[ ] Step 2: Design chunking strategy
[ ] Step 3: Select embedding model
[ ] Step 4: Select vector database
[ ] Step 5: Design retrieval pipeline
[ ] Step 6: Design quality metrics

Step 1: Analyze Source Documents

Understand what's being indexed:

Document types: PDFs, web pages, code, structured data, conversations
Volume: Number of documents, total size, growth rate
Update frequency: Static corpus, daily updates, real-time
Structure: Highly structured (tables, headers) vs unstructured (prose, transcripts)
Quality: Clean text vs noisy (OCR artifacts, HTML remnants, duplicates)

Step 2: Design Chunking Strategy

Choose how to split documents:

Fixed-size: 500-1000 tokens with 100-200 token overlap. Simple but may split concepts.
Semantic: Split on paragraph/section boundaries. Preserves meaning but variable size.
Hierarchical: Parent-child chunks (section summary + detail chunks). Best for complex docs.
Recursive: Start large, recursively split until chunks fit size target.
Metadata enrichment: Attach source, section title, page number to each chunk.

Step 3: Select Embedding Model

Choose the embedding approach:

OpenAI text-embedding-3-small/large: Best general-purpose, 1536/3072 dimensions
Cohere embed-v3: Strong multilingual, supports search and classification modes
Open source (BGE, E5): Self-hosted, lower cost at scale, variable quality
Considerations: Dimension size (storage), context length, multilingual support, cost per token

Step 4: Select Vector Database

Choose storage and retrieval:

| Database | Hosted | Open Source | Hybrid Search | Best For | |----------|--------|------------|---------------|----------| | Pinecone | Yes | No | Yes (sparse+dense) | Production, managed | | Weaviate | Yes | Yes | Yes (BM25+vector) | Self-hosted, rich filtering | | ChromaDB | No | Yes | No | Prototyping, local dev | | pgvector | Via Supabase | Yes | BM25 separate | Already using Postgres | | Qdrant | Yes | Yes | Yes | High-performance, filtering |

Step 5: Design Retrieval Pipeline

Build the query-time pipeline:

Query preprocessing: Expand abbreviations, detect intent, generate sub-queries
Embedding: Encode query with same model used for documents
Initial retrieval: Top-K vector search (K=20-50)
Reranking: Cross-encoder reranker to reorder by relevance (return top 5-10)
Context assembly: Combine retrieved chunks into a prompt, add metadata
Generation: LLM call with assembled context + user query

Step 6: Design Quality Metrics

Define how to measure RAG quality:

Retrieval metrics: Recall@K (are relevant docs in top K?), MRR (is the best doc ranked first?)
Generation metrics: Faithfulness (does the answer stick to context?), relevance (does it answer the question?)
End-to-end: Answer accuracy on golden dataset, hallucination rate
Monitoring: Track retrieval scores over time, flag low-confidence answers

Compaction resilience: If context was lost during a long session, re-read the Inputs section to reconstruct what system is being analyzed, check the Progress Checklist for completed steps, then resume from the earliest incomplete step.

Output Format

# RAG Architecture

## Source Analysis
| Attribute | Value |
|-----------|-------|
| Document types | [Types] |
| Corpus size | [Size] |
| Update frequency | [Frequency] |

## Chunking Strategy
**Method:** [Fixed/Semantic/Hierarchical]
**Target chunk size:** [X tokens]
**Overlap:** [X tokens]
**Metadata:** [Fields attached to each chunk]

## Embedding Pipeline
**Model:** [Name]
**Dimensions:** [N]
**Cost:** [$X per 1M tokens]
**Batch processing:** [Strategy for initial load vs incremental updates]

## Vector Database
**Choice:** [Database]
**Rationale:** [Why this DB]
**Index configuration:** [HNSW params, quantization, etc.]
**Hybrid search:** [BM25 + vector approach]

## Retrieval Pipeline

Query → [Preprocess] → [Embed] → [Vector Search (top 20)] → [Rerank (top 5)] → [Assemble Context] → [LLM] → [Validate] → Response


| Stage | Latency | Cost |
|-------|---------|------|
| Embedding | Xms | $X |
| Vector search | Xms | $X |
| Reranking | Xms | $X |
| Generation | Xms | $X |
| **Total** | **Xms** | **$X** |

## Quality Metrics
| Metric | Target | Measurement |
|--------|--------|-------------|
| Recall@10 | >90% | Golden dataset |
| Faithfulness | >95% | Automated scoring |
| Hallucination rate | <5% | Reference checking |

## Cost Model
| Component | Monthly Cost (at X queries/day) |
|-----------|-------------------------------|
| Embeddings | $X |
| Vector DB | $X |
| Reranking | $X |
| Generation | $X |
| **Total** | **$X** |

Handoff

Hand off to prompt-engineering if retrieval pipeline design reveals system prompt optimization needs for context assembly.
Hand off to ai-evaluation if RAG quality metrics require a formal evaluation framework or golden dataset creation.

Quality Checks

[ ] Chunking strategy is justified against document structure (not just default 500 tokens)
[ ] Embedding model matches the query language and domain
[ ] Retrieval pipeline includes reranking (not just raw vector similarity)
[ ] Cost model accounts for both indexing and query costs
[ ] Quality metrics have defined targets and measurement approach
[ ] Update strategy handles incremental changes (not re-index everything)
[ ] Latency budget is broken down by pipeline stage

Evolution Notes