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protocol-writer
Protocol Writer Skill
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Skill 资源库
AI Skill 资源库
把 Skill 的源码、资源快照、README、包体和安装信号放进一个可搜索、可筛选的公开目录。
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pysam-genomic-files
Read/write SAM/BAM/CRAM, VCF/BCF, FASTA/FASTQ. Region queries, pileup, variant filtering, read groups. Python htslib wrapper exposing samtools/bcftools CLI. Use STAR/BWA for alignment; GATK/DeepVarian…
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research-grants
Write competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC. Agency-specific formatting, review criteria, budget preparation, broader impacts, significance statements, innovation na…
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researchwrite
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scientific-brainstorming
Creative research ideation and exploration. Use for open-ended brainstorming sessions, exploring interdisciplinary connections, challenging assumptions, or identifying research gaps. Best for early-st…
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seaborn-statistical-plots
Statistical visualization on matplotlib with native pandas support. Auto aggregation, CIs, grouping for distributions (histplot, kdeplot), categorical (boxplot, violinplot), relational (scatterplot, l…
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star-rna-seq-aligner
Splice-aware RNA-seq aligner producing sorted BAM and splice junction tables. Builds genome index, runs two-pass alignment for better junctions. Outputs sorted BAM, junctions (SJ.out.tab), stats (Log.…
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subagent-driven-literature-review
Use parallel subagents for large-scale paper screening and deep dive analysis
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pyimagej-fiji-bridge
Python bridge to ImageJ2/Fiji for macros, plugins (Bio-Formats, TrackMate, Analyze Particles), NumPy↔ImagePlus/ImgLib2 exchange, and ImageJ Ops. Automates Fiji headlessly from Python. Use scikit-image…
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ranking-elo-update
Apply deterministic Elo updates for one completed tournament batch, persist touched hypotheses, and write the ranking update receipt.
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research-overview-pipeline
Generate the final research overview from the top-ranked hypotheses.
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run-policy-router
Interpret the user's high-level research intent into `RUN_POLICY.yaml` and `state/POLICY_DECISION.json`.
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scientific-writing
Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process with (1) section outlines with key points using research…
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seaborn-statistical-visualization
Statistical visualization on matplotlib + pandas. Distributions (histplot, kdeplot, violin, box), relational (scatter, line), categorical, regression, correlation heatmaps. Auto aggregation/CIs. Use p…
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stat-writing
End-to-end statistical writing assistant for LaTeX - draft title/abstract/keywords, expand outlines into sections, audit manuscripts, write reviewer reports and response letters, and scaffold book man…
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trackpy-particle-tracking
Python library for single-particle tracking (SPT) in video microscopy via the Crocker-Grier algorithm. Locate particles (fluorescent spots, colloids, vesicles, cells) per frame, link into trajectories…
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pymc-bayesian-modeling
Bayesian modeling with PyMC 5: priors, likelihood, NUTS/ADVI sampling, diagnostics (R-hat, ESS), LOO/WAIC comparison, prediction. Hierarchical, logistic, GP variants; predictive checks.
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research-config
Generate a `ResearchPlan` from `input.md` or equivalent raw research input.
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research-radar-update
Research Radar Update
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samtools-bam-processing
CLI toolkit for SAM/BAM/CRAM: sort, index, convert, filter, QC alignments. Core commands: view, sort, index, flagstat, stats, depth, markdup, merge. Required between alignment and variant/peak calling…
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scikit-image-processing
Python image processing for microscopy and bioimage analysis. Read/write images, filter (Gaussian, median, LoG), segment (thresholding, watershed, active contours), measure region properties, detect f…
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searching-scientific-literature
PubMed search with keyword optimization, result parsing, and metadata extraction
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statsmodels-statistical-modeling
Python statistical modeling: regression (OLS, WLS, GLM), discrete (Logit, Poisson, NegBin), time series (ARIMA, SARIMAX, VAR), with rigorous inference, diagnostics, and hypothesis tests. Use scikit-le…
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traversing-citation-networks
Smart backward and forward citation following via Semantic Scholar, with relevance filtering and deduplication
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