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Full-featured computational pathology toolkit. Use for advanced WSI analysis including multiplexed immunofluorescence (CODEX, Vectra), nucleus segmentation, tissue graph construction, and ML model tra…
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Create and audit editable scientific posters in macro-free PowerPoint (.pptx) from author-approved local content and assets. Use when the requested deliverable is a PowerPoint research/conference post…
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Qiongli version: v1.17.0. Cross-platform academic research workflow for Codex, Claude / Claude Code, and CLI. Use for academic research lifecycle work: paper planning, literature review, paper reading…
Submit→wait_for_notification→harvest workflow for the user's SSH/SLURM hosts. Load once you've decided to dispatch remote.
Add field definitions to existing research outline.
Inspect a research repository and write a compact `.research/` workspace manifest (project_manifest.yml, experiment_matrix.yml, data_dictionary.yml) so future AI sessions can orient themselves without…
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Reorganizes a paper into a storyline suitable for scientific posters. Use when planning the section structure, title hierarchy, figure selection, and live-explanation flow for an academic conference p…
Decision-grade protein thermal stability prediction (Tm, thermophilicity, ΔTm) from sequence and/or structure, with multi-tool evidence integration and calibrated interpretation.
Python library for working with DICOM (Digital Imaging and Communications in Medicine) files. Use this skill when reading, writing, or modifying medical imaging data in DICOM format, extracting pixel …
Automates Risk of Bias 2 (ROB2) assessment for RCT papers by analyzing text against specific domains and synthesizing a report. Use when you need to assess the quality of a clinical trial paper or eva…
Checks biomedical manuscripts against reporting guidelines such as CONSORT, STROBE, PRISMA, and TRIPOD to identify missing or weak reporting elements before submission or revision.
Add items (research objects) to existing research outline.
Read research outline, launch independent agent for each item for deep research. Disable task output.
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Use this skill when the user requests to generate, create, or make presentations (PPT/PPTX). Creates visually rich slides by generating images for each slide and composing them into a PowerPoint file.
Stop and consult this skill whenever your response would include specific facts about Anthropic's products. Covers: Claude Code (how to install, Node.js requirements, platform/OS support, MCP server i…
Build clinical/healthcare deep-learning pipelines with PyHealth — loading EHR/signal/imaging datasets (MIMIC-III/IV, eICU, OMOP, SleepEDF, ChestXray14, EHRShot), defining tasks (mortality, readmission…
Checks whether manuscript references are accurately matched to claims, appropriately scoped, and not overextended, misquoted, or second-hand cited.
Conduct preliminary research on a topic and generate research outline. For academic research, benchmark research, technology selection, etc.
Maturing research code through stages: exploratory notebook → reusable script → versioned module → installable package → publishable library. Covers when to refactor, what to extract first, how to add…
Guide a researcher through 5 Socratic segments — research question sharpening, expected mechanism, identifiability check, validation plan, risk register — and produce `.research/design_brief.md`. Use …