pm-export
Export PubMed paper(s) to Zotero or save as RIS file. Supports single paper by PMID or batch export from search results. Use when user wants to save papers to their reference manager.
把 Skill 的源码、资源快照、README、包体和安装信号放进一个可搜索、可筛选的公开目录。
Export PubMed paper(s) to Zotero or save as RIS file. Supports single paper by PMID or batch export from search results. Use when user wants to save papers to their reference manager.
High-performance genomic interval operations and bioinformatics file I/O on Polars DataFrames. Overlap, nearest, merge, coverage, complement, subtract for BED/VCF/BAM/GFF intervals. Streaming, cloud-n…
Use this skill whenever a user wants to adopt the scicomp-research-skills framework on an EXISTING project (paper, software library, analysis repo) rather than starting from scratch -- OR when the age…
數學證明撰寫技能 — 從主張提取到 LaTeX 排版的完整證明工作流。當使用者需要撰寫或驗證數學定理、引理、命題的形式證明,或需要推導公式、整理理論分析時,一定要使用此技能。觸發詞包括:數學證明、prove、theorem、lemma、proposition、推導、理論分析、寫 proof、LaTeX 數學、formal proof。適用於機器學習理論、統計學習理論、最佳化等需要嚴謹數學推導的場景…
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Strategic publication planning and venue selection for research
Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis.
Expert guidance for Fully Sharded Data Parallel training with PyTorch FSDP - parameter sharding, mixed precision, CPU offloading, FSDP2
Find full-text download links for a PubMed paper by PMID - DOI, PMC open access, Sci-Hub, and publisher links. Use when user wants to read or download a paper's full text.
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Install or reconcile research-project safety rules and protected folder boundaries for data, code, outputs, and paper sources. Use when a project lacks guardrails or is being migrated into the governe…
Proofread a LaTeX academic paper across eleven language, notation, citation, and consistency categories. Use when the requested task is bounded proofreading rather than substantive rewriting, clarity …
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Search PubMed, fetch article metadata, traverse citation graphs, and look up MeSH terms from the command line. Use when: (1) Searching PubMed with Boolean/MeSH queries, (2) Fetching article details by…
Genomic file toolkit. Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences, extract regions, calculate coverage, for NGS data processing pipelines.
Adds PyTorch FSDP2 (fully_shard) to training scripts with correct init, sharding, mixed precision/offload config, and distributed checkpointing. Use when models exceed single-GPU memory or when you ne…
Navigate PubMed search result pages or change sort order. Use when user wants to see more results or change ordering.
analyze a professor from google scholar, publication lists, personal websites, lab pages, and field-specific bibliographic databases (e.g., DBLP, PubMed, SSRN, PhilPapers, MathSciNet, arXiv, Scopus) t…
Structured methodology for constructing and verifying mathematical proofs in statistical research
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Therapeutics Data Commons. AI-ready drug discovery datasets (ADME, toxicity, DTI), benchmarks, scaffold splits, molecular oracles, for therapeutic ML and pharmacological prediction.
High-level PyTorch framework with Trainer class, automatic distributed training (DDP/FSDP/DeepSpeed), callbacks system, and minimal boilerplate. Scales from laptop to supercomputer with same code. Use…