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Build and maintain a verified literature-survey corpus for a research paper -- BibTeX entries, published-manuscript PDFs, text extractions for AI consumption, per-paper survey notes (~30-50 lines each…
Extend context windows of transformer models using RoPE, YaRN, ALiBi, and position interpolation techniques. Use when processing long documents (32k-128k+ tokens), extending pre-trained models beyond …
Convert heterogeneous documents and selected URIs to Markdown with Microsoft MarkItDown for text analysis, search, and LLM/RAG ingestion. Covers safe local conversion, streams, Office/PDF/data formats…
Core mathematical concepts and theoretical frameworks for statistics
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JASA/Biometrika manuscript structure with VanderWeele notation standards
Local-only stress test for proposals, opening reports, grant drafts, and research designs.
Turn a list of papers (Zotero collection, Obsidian cluster, manual list) into a compact comparison matrix written to .research/literature_matrix.md, instead of generic per-paper summaries. Use when th…
State-space model with O(n) complexity vs Transformers' O(n²). 5× faster inference, million-token sequences, no KV cache. Selective SSM with hardware-aware design. Mamba-1 (d_state=16) and Mamba-2 (d_…
Convert handwritten or image-based mathematical content into notation-consistent LaTeX. Use when Codex needs to transcribe equations from notes, screenshots, whiteboards, or scans, reconcile ambiguous…
当任务是把医学指南 PDF 转成最终 Markdown，并需要先调用 PaddleOCR-VL 做 OCR/版面解析，再用 VLM 把指南中的图片、图表、算法图或流程图转换为 Mermaid，最后回填输出一个保留正文和表格的 Markdown 文件时使用。也适用于已有 PaddleOCR Markdown 但仍需抽取图片并转 Mermaid 的情况。
Drafting and reviewing the Methods section of papers involving medical imaging, radiomics, or deep learning on imaging modalities (CT, MRI, X-ray, US, WSI). Covers acquisition reporting, preprocessing…
Six-phase protocol for adapting methods across research domains
Provides guidance for enterprise-grade RL training using miles, a production-ready fork of slime. Use when training large MoE models with FP8/INT4, needing train-inference alignment, or requiring spec…
Local-only literature synthesis from user-provided notes, excerpts, and local files.
Expert guidance for fine-tuning LLMs with LLaMA-Factory - WebUI no-code, 100+ models, 2/3/4/5/6/8-bit QLoRA, multimodal support
Audit technical manuscripts for mathematical correctness, logical soundness, notation consistency, evidence quality, and figure or code alignment. Use when Codex needs to review a paper, verify deriva…
Strengthen the mathematical substance of research papers by proposing or implementing better proofs, sharper results, cleaner derivations, and stronger formulations. Use when Codex needs to improve th…
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Effective communication strategies for statistical methods
Local-only Socratic dialogue for research direction, framing, and method discussion.
Local-only material organization for mixed notes, interviews, reports, and project files.