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Index entry for an upstream research Skill intended for research work involving bio atac seq atac peak calling. Maintained upstream by 1695963547; source files are not included in this package.
Index entry for an upstream research Skill intended for research work involving bio atac seq footprinting. Maintained upstream by 1695963547; source files are not included in this package.
Build, review, debug, and automate CalculiX finite-element workflows. Use when working with CalculiX `.inp` decks, Abaqus-style keywords, materials, steps, contacts, boundary conditions, static or fre…
Navigate foundational HPC knowledge across concepts, architectures, schedulers, Linux usage, storage and RDMA, containers, cloud basics, and cluster administration patterns distilled from hpclib.com. …
Build, review, debug, and launch CUDA- and GPU-accelerated HPC workflows. Use when working with `nvcc`, host-compiler compatibility, CUDA-aware MPI, rank-to-GPU mapping, `CUDA_VISIBLE_DEVICES`, Slurm …
Generate, review, debug, and recover LAMMPS molecular dynamics input scripts. Use when working with LAMMPS command ordering, data files, force fields, ensembles, neighbor settings, thermo output, or c…
Generate, review, debug, and recover OpenFOAM case files for CFD workflows. Use when working with OpenFOAM dictionaries, case structure, turbulence fields, boundary conditions, decomposition, numerics…
Build, review, debug, and tune PETSc-based solver workflows. Use when working with PETSc `Vec`, `Mat`, `KSP`, `PC`, `SNES`, `TS`, options-database tuning, MPI-distributed assembly, external package in…
Index entry for an upstream research Skill intended for research work involving bio atac seq atac qc. Maintained upstream by 1695963547; source files are not included in this package.
Index entry for an upstream research Skill intended for research work involving bio atac seq motif deviation. Maintained upstream by 1695963547; source files are not included in this package.
Build, review, debug, and automate ElmerFEM workflows. Use when working with Elmer `.sif` solver input files, mesh directories, equation and material blocks, multiphysics coupling, boundary conditions…
Build, review, debug, and automate Gaussian quantum chemistry workflows. Use when working with Gaussian input files, Link 0 directives, route sections, charge and multiplicity, basis sets, SCF or opti…
Build, review, debug, and automate GROMACS molecular simulation workflows. Use when working with GROMACS preprocessing, topology and coordinate files, `.mdp` parameters, energy minimization, equilibra…
Create, review, debug, and recover LS-DYNA keyword decks and simulation workflows. Use when working with LS-DYNA `*.k` or `*.key` input files, include trees, explicit crash or impact models, implicit …
Coordinate end-to-end HPC execution workflows across scheduler submission, job monitoring, log tracking, self-healing, and post-processing handoff. Use when a task spans Slurm, PBS, LSF, MPI sizing, q…
Build, review, debug, and automate Quantum ESPRESSO workflows. Use when working with `pw.x` input files, pseudopotentials, k-point setup, SCF/relax/bands workflows, plane-wave cutoffs, occupations, or…
Index entry for an upstream research Skill intended for research work involving bio atac seq differential accessibility. Maintained upstream by 1695963547; source files are not included in this packag…
Lightweight WSI tile extraction and preprocessing. Use for basic slide processing tissue detection, tile extraction, stain normalization for H&E images. Best for simple pipelines, dataset preparation,…
Build, review, and debug FEniCS or DOLFINx PDE scripts for finite-element workflows. Use when translating PDEs into UFL, selecting function spaces, applying boundary conditions, choosing between class…
Build, review, debug, and automate Gmsh geometry and meshing workflows. Use when working with `.geo` scripts, the Gmsh Python API, GEO versus OpenCASCADE modeling, physical groups, mesh-size fields, t…
Build, review, debug, and tune hypre-based sparse solver workflows. Use when working with hypre `IJ`, `Struct`, or `SStruct` interfaces, `BoomerAMG`, Krylov solvers, MPI-distributed sparse systems, PE…
Build, review, debug, and launch MPI-based applications across Open MPI, MPICH-family, Intel MPI, MVAPICH2, and scheduler-integrated runtimes. Use when working with `mpirun` or `mpiexec` or `srun`, wr…
Build, review, debug, and automate ParaView post-processing and visualization workflows. Use when working with ParaView readers, filters, color maps, screenshots, state files, pvpython or pvbatch scri…
Build, review, debug, and stabilize Spack-based HPC software stacks. Use when working with Spack specs, variants, compilers, externals, environments, concretization, compiler or MPI matrices, site sta…